Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. H2AFX, H2A histone family, member X
Sequence ID:NM_002105
RefSeqGene ID:NG_008093
Entrez Gene ID:3014
Ensembl ID:ENSG00000188486

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118964584 - 118966147

NM_002105 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3139343Full LengthBC011694H2A histone family, member X
3534359Full LengthBC013416H2A histone family, member X
3537648Full LengthBC004915H2A histone family, member X

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002096  

Protein Infomation

NM_002105 NP_002096 P16104 Histone

Related Sequences

BC004915 AAH04915 P16104
BC011694 AAH11694 P16104
BC013416 AAH13416 P16104
X14850 CAA32968 P16104
CR457079 CAG33360 P16104

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens H2AFX NP_002096 R.norvegicus H2afx 500987   NP_001102761 99
M.musculus H2afx 15270 Gene Info NP_034566 97
S.pombe hta2 2542226   NP_594421 86
N.crassa NCU02437 3875589   XP_959442 85
S.pombe hta1 2539499   NP_588180 83
S.cerevisiae HTA1 851811   NP_010511 78
S.cerevisiae HTA2 852283   NP_009552 77
A.thaliana HTA12 831891   NP_001190208 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)