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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PLOD2, procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
Sequence ID:NM_000935
NM_182943
RefSeqGene ID:NG_009251
Entrez Gene ID:5352
Ensembl ID:ENSG00000152952

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BRUCK SYNDROME 2 

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 145787456 - 145878954

 Exon Info From UCSC:
NM_000935
NM_182943

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4994235Full LengthBC037169procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
3883264IncompleteBC016834procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000926  NP_891988  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000935 NP_000926 O00469 EC 1.14.11.4 2OG-FeII_Oxy
NM_182943 NP_891988     2OG-FeII_Oxy

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U84573 AAB58363 O00469 EC 1.14.11.4
BC016834 AAH16834 Q96AR9  
BC037169 AAH37169 O00469 EC 1.14.11.4
AB209879 BAD93116 O00469 EC 1.14.11.4
AK125700 BAG54235 B3KWS3  
AK295084 BAG58125 B4DHG3  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PLOD2 NP_891988 M.musculus Plod2 26432 Gene Info NP_001136388 91
R.norvegicus Plod2 300901   NP_787065 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)