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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATP6V1A, ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
Sequence ID:NM_001690
Entrez Gene ID:523
Ensembl ID:ENSG00000114573

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 113465938 - 113530903

 Exon Info From UCSC:
NM_001690

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4454722Full LengthBC013138ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001681  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001690 NP_001681 P38606 EC 3.6.3.14 ATP-synt_ab
ATP-synt_ab_C
ATP-synt_ab_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
L09235 AAA83249 P38606 EC 3.6.3.14
AF113129 AAF14870 P38606 EC 3.6.3.14
BC013138 AAH13138 P38606 EC 3.6.3.14
BT006672 AAP35318 P38606 EC 3.6.3.14
AK314779 BAG37315 P38606 EC 3.6.3.14
AK293804 BAH11601 B7Z1R5  
AK295150 BAH11992 B7Z2V6  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP6V1A NP_001681 M.musculus Atp6v1a 11964 Gene Info NP_031534 98
R.norvegicus Atp6v1a 685232   NP_001101788 98
A.gambiae VATA_ANOGA 1273824   XP_312843 85
D.melanogaster Vha68-2 45012   NP_652004 84
C.elegans vha-13 3564970   NP_506559 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)