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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATG3, autophagy related 3
Sequence ID:NM_022488
Entrez Gene ID:64422
Ensembl ID:ENSG00000144848

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 112251542 - 112280375

 Exon Info From UCSC:
NM_022488

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3633903Full LengthBC002830ATG3 autophagy related 3 homolog (S. cerevisiae)
3938447Full LengthBC024221ATG3 autophagy related 3 homolog (S. cerevisiae)
5296971IncompleteBC043267ATG3 autophagy related 3 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071933  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022488 NP_071933 Q9NT62 Autophagy_N
Autophagy_C

Related Sequences

 
mRNAGenPeptSwissProt
AF202092 AAG35611 Q9NT62
BC002830 AAH02830 Q9NT62
BC024221 AAH24221 Q9NT62
DQ893424 ABM84350  
DQ896774 ABM87773  
AK025778 BAB15237 Q9NT62
AB079384 BAB90843 Q9NT62
AL137515 CAB70781 Q9NT62

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG3 NP_071933 M.musculus Atg3 67841 Gene Info NP_080678 97
R.norvegicus Atg3 171415   NP_599221 97
D.melanogaster Aut1 40044   NP_649059 67
A.gambiae AgaP_AGAP011582 1271177   XP_309926 63
C.elegans atg-3 176921   NP_500024 58
A.thaliana ATG3 836271   NP_568934 51
S.pombe apg3 2541025   NP_596664 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)