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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCP2, sterol carrier protein 2
Sequence ID:NM_001007098
NM_001007099
NM_001007100
NM_001007250
NM_001193599
NM_001193600
NM_001193617
NM_002979
RefSeqGene ID:NG_012211
Entrez Gene ID:6342
Ensembl ID:ENSG00000116171

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
LEUKOENCEPHALOPATHY WITH DYSTONIA AND MOTOR NEUROPATHY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 53481075 - 53484412

 Exon Info From UCSC:
NM_001007098
NM_001007099
NM_001007100
NM_001007250
NM_001193599
NM_001193600
NM_001193617
NM_002979

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5176900Full LengthBC067108sterol carrier protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007099  NP_001007101  NP_001007100  NP_002970  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001007098 NP_001007099     Thiolase_C
NM_001007099 NP_001007100     SCP2
NM_001007100 NP_001007101     SCP2
NM_001007250 NP_001007251      
NM_001193599 NP_001180528      
NM_001193600 NP_001180529      
NM_001193617 NP_001180546      
NM_002979 NP_002970 P22307 EC 2.3.1.176 SCP2
Thiolase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M75883 AAA03557 P22307 EC 2.3.1.176
M75884 AAA03558 P22307 EC 2.3.1.176
M55421 AAA03559 P22307 EC 2.3.1.176
S52450 AAB24921 P22307 EC 2.3.1.176
BC005911 AAH05911 P22307 EC 2.3.1.176
BC067108 AAH67108 P22307 EC 2.3.1.176
HQ448119 ADQ32600    
AB208789 BAD92026 Q59HG9  
AK312856 BAG35708 B2R761  
AK294631 BAG57810 B4DGJ9  
AK295214 BAG58208 B4DHP6  
AK303400 BAG64455 B4E0J3  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCP2 NP_002970 M.musculus Scp2 20280 Gene Info NP_035457 89
R.norvegicus Scp2 25541   NP_612517 88
D.melanogaster ScpX 44183   NP_524715 60
A.gambiae AgaP_AGAP007921 1278036   XP_317563 59
C.elegans Y57A10C.6 174881   NP_496639 59
N.crassa NCU03372 3872454   XP_956307 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)