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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMARCC1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Sequence ID:NM_003074
Entrez Gene ID:6599
Ensembl ID:ENSG00000173473

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 47629605 - 47721945

 Exon Info From UCSC:
NM_003074

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3912713Full LengthBC050564SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
8322517Full LengthBC113465SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
40125764Full LengthBC117213SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
3450751IncompleteBC040242SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
4508075IncompleteBC039843SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
5138577IncompleteBC021862SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
5580002IncompleteBC032564SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
6139607IncompleteBC065253SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003065  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003074 NP_003065 Q92922 Myb_DNA-binding
SWIRM

Related Sequences

 
mRNAGenPeptSwissProt
U66615 AAC50693 Q92922
BC021862 AAH21862 Q05CR1
BC032564 AAH32564 Q05BW5
BC039843 AAH39843 Q92922
BC050564 AAH50564 Q58EY4
BC065253 AAH65253 Q92922
BC113465 AAI13466 Q92922
BC117213 AAI17214 Q92922
EU832251 ACE86821  
EU832157 ACE87507  
AK302412 BAG63721 B4DYF9
AK302541 BAG63813 B4DYQ1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCC1 NP_003065 R.norvegicus Smarcc1 301020   NP_001100331 96
M.musculus Smarcc1 20588 Gene Info NP_033237 96
S.pombe ssr2 2541851   NP_593800 42
N.crassa NCU08003 3878837   XP_962673 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta