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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TXNDC12, Thioredoxin domain containing 12 (endoplasmic reticulum)
Sequence ID:NM_015913
Entrez Gene ID:51060
Ensembl ID:ENSG00000117862

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 52485803 - 52520878

NM_015913 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
218985248580652486683
8999825248916252489245
98310525249018152490250
105311265249294652493019
112711795249424952494301
118012405250720852507268
124116165252067152521046

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959502Full LengthBC008953thioredoxin domain containing 12 (endoplasmic reticulum)
3506109Full LengthBC001493thioredoxin domain containing 12 (endoplasmic reticulum)
3659407Full LengthBC008913thioredoxin domain containing 12 (endoplasmic reticulum)

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_015913 NP_056997 O95881 EC 1.8.4.2  
NM_138417 NP_612426 Q96EK9   KTI12

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF131758 AAD20035 O95881 EC 1.8.4.2
BC001493 AAH01493 O95881 EC 1.8.4.2
BC008913 AAH08913 O95881 EC 1.8.4.2
BC008953 AAH08953 O95881 EC 1.8.4.2
BC012173 AAH12173 Q96EK9  
AF327348 AAL56009 Q96EK9  
AF543416 AAN34781 O95881 EC 1.8.4.2
AY358982 AAQ89341 O95881 EC 1.8.4.2
DQ892239 ABM83165    
DQ895439 ABM86365    
HQ448666 ADQ33144    
AK313746 BAG36486 B2R9D9  
AK075409 BAG52132 O95881 EC 1.8.4.2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TXNDC12 NP_056997 M.musculus Txndc12 66073 Gene Info NP_079610 93
R.norvegicus Txndc12 298370   NP_001094310 92
C.elegans Y57A10A.23 174863   NP_496599 46
C.elegans F49H12.5 180520   NP_508381 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)