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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTDSPL, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Sequence ID:NM_001008392
NM_005808
Entrez Gene ID:10217
Ensembl ID:ENSG00000144677

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 37903668 - 38022508

 Exon Info From UCSC:
NM_001008392
NM_005808

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100066369Full LengthBC166643CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001008393  NP_005799  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001008392 NP_001008393 O15194 EC 3.1.3.16 NIF
NM_005808 NP_005799     NIF

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC166643 AAI66643    
AY279532 AAP34400 O15194 EC 3.1.3.16
AY364238 AAQ76797 O15194 EC 3.1.3.16
D88153 BAA21667 O15194 EC 3.1.3.16
AJ575644 CAE11804 O15194 EC 3.1.3.16
AJ575645 CAE11805 O15194 EC 3.1.3.16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTDSPL NP_001008393 M.musculus Ctdspl 69274 Gene Info NP_598471 96
S.pombe SPAC2F7.02c 2541901   NP_592973 63
S.cerevisiae PSR2 850706   NP_013119 58
S.cerevisiae PSR1 850650   NP_013091 58
N.crassa NCU08380 3881416   XP_965283 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)