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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB5A, RAB5A, member RAS oncogene family
Sequence ID:NM_004162
Entrez Gene ID:5868
Ensembl ID:ENSG00000144566

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p24-p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 19988758 - 20026643

NM_004162 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14421998857119989012
4436981999229719992552
6998502001709220017243
8519732001753820017660
97410672001980120019894
106825262002519920026657

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3454268Full LengthBC018288RAB5A, member RAS oncogene family
3463669Full LengthBC001267RAB5A, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004153  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004162 NP_004153 P20339 Ras

Related Sequences

 
mRNAGenPeptSwissProt
M28215 AAA60245 P20339
BC001267 AAH01267 P20339
BC018288 AAH18288 P20339
AF498936 AAM21084 P20339
AF464088 AAO15677 P20339
DQ891790 ABM82716  
DQ894972 ABM85898  
AK312618 BAG35504 P20339
AK295992 BAG58767 B4DJA5
CR536492 CAG38731 P20339
AM392797 CAL37675  
AM393001 CAL37879  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB5A NP_004153 R.norvegicus Rab5a 64633   NP_073183 98
M.musculus Rab5a 271457 Gene Info NP_080163 98
R.norvegicus LOC100361891 100361891   XP_002728164 97
C.elegans rab-5 172755   NP_492481 79
A.thaliana RHA1 834549   NP_199326 68
A.thaliana ARA7 827706   NP_193699 63
N.crassa NCU06410 3872099   XP_955952 58
S.cerevisiae VPS21 854256   NP_014732 57
P.falciparum Rab5c 813204   XP_001350999 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta