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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LMCD1, LIM and cysteine-rich domains 1
Sequence ID:NM_014583
Entrez Gene ID:29995
Ensembl ID:ENSG00000071282

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p26-p24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 8543520 - 8609806

NM_014583 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
115685435108543665
15724585744228574510
24650185788708579125
50283785902538590588
838105386071178607332
1054173386091258609804

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3343074Full LengthBC000646LIM and cysteine-rich domains 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055398  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014583 NP_055398 Q9NZU5 LIM
PET

Related Sequences

 
mRNAGenPeptSwissProt
AF169284 AAF34411 Q9NZU5
AF216709 AAG36778 Q9NZU5
BC000646 AAH00646 Q9NZU5
DQ891747 ABM82673  
DQ894926 ABM85852  
AK022176 BAB13976 Q9NZU5
AK293849 BAG57247 B4DEY6
AK294455 BAG57691 B4DG80
AK300803 BAH13351 B7Z6R5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LMCD1 NP_055398 M.musculus Lmcd1 30937 Gene Info NP_659048 93
R.norvegicus Lmcd1 494021   NP_001008562 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)