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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PHF5A, PHD finger protein 5A
Sequence ID:NM_032758
Entrez Gene ID:84844
Ensembl ID:ENSG00000100410

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 41855720 - 41864691

NM_032758 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
428114185572141856490
8129784186345141863617
97910024186412741864150
100311054186460541864707

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989046Full LengthBC007321PHD finger protein 5A
5574722Full LengthBC075808PHD finger protein 5A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_116147  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032758 NP_116147 Q7RTV0 PHF5

Related Sequences

 
mRNAGenPeptSwissProt
BC007321 AAH07321 Q7RTV0
BC075808 AAH75808 Q7RTV0
EU446678 ABZ92207  
CR456398 CAG30284 Q7RTV0
CU012956 CAK54387  
CU013244 CAK54686  
BK000563 DAA00074 Q7RTV0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PHF5A NP_116147 M.musculus Phf5a 68479 Gene Info NP_081013 100
R.norvegicus Phf5a 192246   NP_620243 100
A.gambiae AgaP_AGAP009905 1279319   XP_319026 98
D.melanogaster CG9548 33909   NP_609038 96
A.thaliana AT2G30000 817551   NP_565691 93
A.thaliana AT1G07170 837228   NP_001077473 93
C.elegans phf-5 3564851   NP_001022909 91
N.crassa NCU00348 3873869   XP_957819 75
S.pombe ini1 2541843   NP_593792 70
S.cerevisiae RDS3 856209   NP_015419 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)