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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC25A17, solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17
Sequence ID:NM_006358
Entrez Gene ID:10478
Ensembl ID:ENSG00000100372

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 41166091 - 41176198

NM_006358 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1913634116564041166984
136414464116994041170022
144715424117304341173138
154316884117323141173376
168918054117501241175128
180619574118852841188679
195820244119051741190583
202520854119502641195086
208622794121519841215391

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3604411Full LengthBC012998solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17
4046173Full LengthBC005957solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006349  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006358 NP_006349 O43808 Mito_carr

Related Sequences

 
mRNAGenPeptSwissProt
BC005957 AAH05957 O43808
BC012998 AAH12998 O43808
DQ893138 ABM84064  
DQ896422 ABM87421  
AK292924 BAF85613 O43808
AK298215 BAG60485 B4DP73
AK300553 BAG62259 B4DU97
Y12860 CAA73367 O43808
CR456577 CAG30463 O43808
CU013178 CAK54609  
CU013466 CAK54908  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC25A17 NP_006349 M.musculus Slc25a17 20524 Gene Info NP_035529 95
R.norvegicus Slc25a17 300083   NP_001119741 95
A.gambiae AgaP_AGAP007520 1269711   XP_308358 56
D.melanogaster CG32250 38532   NP_728982 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)