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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TOM1, Target of myb1 (chicken)
Sequence ID:NM_001135732
NM_005488
NM_001135729
NM_001135730
Entrez Gene ID:10043
Ensembl ID:ENSG00000100284

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 35743074 - 35743967

 Exon Info From UCSC:
NM_001135732
NM_005488
NM_001135729
NM_001135730

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6470390Full LengthBC046151target of myb1 (chicken)
6058445IncompleteBC040006target of myb1 (chicken)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005479  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135729 NP_001129201    
NM_001135730 NP_001129202    
NM_001135732 NP_001129204    
NM_005488 NP_005479 O60784 VHS
GAT

Related Sequences

 
mRNAGenPeptSwissProt
AF040251 AAB97007 O43601
BC046151 AAH46151 O60784
AY358980 AAQ89339 Q6UW50
AK097066 BAG53417 B3KUF5
AK097926 BAG53553 B3KUU1
AK293694 BAG57130 O60784
AK295918 BAG58706 B4DJ44
AK296670 BAG59267 B4DKQ5
AK297827 BAG60163 O60784
AJ006973 CAA07362 O60784
CR456595 CAG30481 O60784
CU013195 CAK54626  
CU013483 CAK54925  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TOM1 NP_001129204 R.norvegicus Tom1 361370   NP_001008366 89
M.musculus Tom1 21968 Gene Info NP_001129731 89
C.elegans C07A12.7 180723   NP_508777 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)