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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C22orf28, Chromosome 22 open reading frame 28
Sequence ID:NM_014306
Entrez Gene ID:51493
Ensembl ID:ENSG00000100220

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 32783582 - 32808227

 Exon Info From UCSC:
NM_014306

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2984824Full LengthBC000151chromosome 22 open reading frame 28
3451576Full LengthBC010308chromosome 22 open reading frame 28
3533883Full LengthBC002970chromosome 22 open reading frame 28
4102148Full LengthBC016707chromosome 22 open reading frame 28

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055121  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_014306 NP_055121 Q9Y3I0 EC 6.5.1.3 UPF0027

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF161466 AAF29081 Q9Y3I0 EC 6.5.1.3
AF155658 AAF67477 Q9Y3I0 EC 6.5.1.3
BC000151 AAH00151 Q9Y3I0 EC 6.5.1.3
BC002970 AAH02970 Q9Y3I0 EC 6.5.1.3
BC010308 AAH10308 Q9Y3I0 EC 6.5.1.3
BC016707 AAH16707 Q9Y3I0 EC 6.5.1.3
DQ890931 ABM81857    
DQ894092 ABM85018    
AK312503 BAG35405 Q9Y3I0 EC 6.5.1.3
AK297826 BAG60162 B4DNA0  
AK297908 BAG60227 B4DNG5  
AK301945 BAG63363 B4DXF1  
AL050255 CAB43357 Q9Y3I0 EC 6.5.1.3
AL137272 CAB70670 Q9Y3I0 EC 6.5.1.3
CR456450 CAG30336 Q9Y3I0 EC 6.5.1.3
CR457175 CAG33456 Q9Y3I0 EC 6.5.1.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C22orf28 NP_055121 M.musculus D10Wsu52e 28088 Gene Info NP_663397 99
R.norvegicus LOC362855 362855   NP_997497 99
D.melanogaster CG9987 35220   NP_609965 85
A.gambiae AgaP_AGAP008147 1277815   XP_317316 81
C.elegans F16A11.2 184556   NP_492498 73
P.falciparum PF11_0068 810620   XP_001347744 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)