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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SPECC1L, Sperm antigen with calponin homology and coiled-coil domains 1-like
Sequence ID:NM_015330
NM_001145468
NM_001254732
NM_001254733
RefSeqGene ID:NG_031915
Entrez Gene ID:23384
Ensembl ID:ENSG00000100014

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 24717416 - 24813219

 Exon Info From UCSC:
NM_015330
NM_001145468

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020460Full LengthBC136471cytospin A
3843328IncompleteBC005093KIAA0376 protein
3927030IncompleteBC041571KIAA0376 protein
4765181IncompleteBC021132KIAA0376 protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056145  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145468 NP_001138940    
NM_001254732 NP_001241661    
NM_001254733 NP_001241662    
NM_015330 NP_056145 Q69YQ0 CH

Related Sequences

 
mRNAGenPeptSwissProt
BC136471 AAI36472 B2RMV2
AY884293 AAX84184 Q69YQ0
AB002374 BAA21574 Q69YQ0
AK301482 BAH13494 B7Z758
AL832425 CAH10609 Q69YQ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SPECC1L NP_001138940 R.norvegicus Specc1l 361828   NP_001034544 95
M.musculus Specc1l 74392 Gene Info NP_001139298 95
A.gambiae AgaP_AGAP002688 1273272   XP_001237450 36
D.melanogaster CG13366 31004   NP_001036254 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)