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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCARF2, Scavenger receptor class F, member 2
Sequence ID:NM_153334
NM_182895
RefSeqGene ID:NG_031868
Entrez Gene ID:91179
Ensembl ID:ENSG00000244486

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 20778874 - 20792112

 Exon Info From UCSC:
NM_153334
NM_182895

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069115Full LengthBC172421scavenger receptor class F, member 2
3163559IncompleteBC000584scavenger receptor class F, member 2
4125591IncompleteBC009326scavenger receptor class F, member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_699165  NP_878315  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_153334 NP_699165 Q96GP6 EGF
Laminin_EGF
DSL
EGF_2
NM_182895 NP_878315   EGF
Laminin_EGF
DSL
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
BC000584 AAH00584 Q96GP6
BC009326 AAH09326 Q96GP6
BC172421 AAI72421  
AF522196 AAN45861 Q96GP6
AB052951 BAC53753 Q96GP6
AB024433 BAD93345 Q96GP6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCARF2 NP_699165 R.norvegicus Scarf2 287949   NP_001099334 87
M.musculus Scarf2 224024 Gene Info NP_722485 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)