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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRDM15, PR domain containing 15
Sequence ID:NM_001040424
NM_022115
Entrez Gene ID:63977
Ensembl ID:ENSG00000141956

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 43218384 - 43299582

 Exon Info From UCSC:
NM_001040424
NM_022115

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5925140Full LengthBC067102PR domain containing 15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071398  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040424 NP_001035514    
NM_022115 NP_071398 P57071 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
AF276513 AAF78093 P57071
BC067102 AAH67102 Q6NXF8
AY063456 AAL60596 P57071
AY078498 AAL85487 P57071
AF426259 AAM53515 P57071
AF426260 AAM53516 P57071
AB209162 BAD92399 Q59GE7
AB051812 BAD99015 Q4W8S5
AB051813 BAD99016 Q4W8S4
AB051814 BAD99017 Q4W8S3
AB051814 BAD99018 Q4W8S0
AB051815 BAD99019 Q4W8S1
AB051815 BAD99020 Q4W8S0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRDM15 NP_001035514 M.musculus Prdm15 114604 Gene Info NP_659038 92
R.norvegicus Prdm15 304054   NP_001100574 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)