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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. OTUB1, OTU domain, ubiquitin aldehyde binding 1
Sequence ID:NM_017670
NR_003089
Entrez Gene ID:55611
Ensembl ID:ENSG00000167770

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 63753917 - 63765174

NM_017670 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16626375332463753985
6637246375580863755869
7258236375612563756223
8249426376400163764119
94310276376432863764412
102812226376452163764715
122322946376482063765891

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051266Full LengthBC007519OTU domain, ubiquitin aldehyde binding 1
4334279Full LengthBC010368OTU domain, ubiquitin aldehyde binding 1
6494629Full LengthBC107701OTU domain, ubiquitin aldehyde binding 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_017670 NP_060140 Q96FW1 EC 3.4.19.12  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF161381 AAF28941 Q96FW1 EC 3.4.19.12
BC007519 AAH07519 Q96FW1 EC 3.4.19.12
BC010368 AAH10368 Q96FW1 EC 3.4.19.12
BC107701 AAI07702 Q96FW1 EC 3.4.19.12
AY177200 AAO27702 Q96FW1 EC 3.4.19.12
AK000120 BAA90956 Q96FW1 EC 3.4.19.12
AK098029 BAG53567 B3KUV5  
AK298287 BAG60547 B4DPD5  
AK303228 BAG64315 B4E053  
AL096714 CAH56412 Q659F9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OTUB1 NP_060140 M.musculus Otub1 107260 Gene Info NP_598911 100
R.norvegicus Otub1 293705   NP_001099802 100
D.melanogaster CG4968 34384   NP_609375 58
A.gambiae AgaP_AGAP009507 1271404   XP_310189 56
A.thaliana AT1G28120 839705   NP_564299 47
C.elegans otub-1 3565820   NP_506709 35
N.crassa NCU00595 3881877   XP_965735 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)