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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYNJ1, synaptojanin 1
Sequence ID:NM_001160302
NM_001160306
NM_003895
NM_203446
RefSeqGene ID:NG_030017
Entrez Gene ID:8867
Ensembl ID:ENSG00000159082

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 34001072 - 34100234

 Exon Info From UCSC:
NM_001160302
NM_001160306
NM_003895
NM_203446

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020593Full LengthBC136603synaptojanin 1
4940362IncompleteBC019630synaptojanin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003886  NP_982271  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001160302 NP_001153774    
NM_001160306 NP_001153778    
NM_003895 NP_003886   Syja_N
Exo_endo_phos
NM_203446 NP_982271   Syja_N
Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF009039 AAC51921 O43426 EC 3.1.3.36
AF009040 AAC51922 O43426 EC 3.1.3.36
BC019630 AAH19630 Q05CZ1  
BC098395 AAH98395 O43426 EC 3.1.3.36
BC136603 AAI36604 B9EGN3  
DQ421853 ABD77575 Q1ZYQ4  
AB020717 BAA74933 O43426 EC 3.1.3.36
AK295706 BAG58552 B4DIP0  
AK304044 BAG64955 B4E1Z3  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYNJ1 NP_003886 R.norvegicus Synj1 85238   NP_445928 94
M.musculus Synj1 104015 Gene Info NP_001157955 90
A.gambiae AgaP_AGAP012175 1280512   XP_320360 53
D.melanogaster synj 37517   NP_726155 52
C.elegans unc-26 178284   NP_001023266 45
S.cerevisiae INP52 855618   NP_014293 39
S.cerevisiae INP53 854276   NP_014752 38
N.crassa NCU03298 3880624   XP_964475 37
S.pombe syj1 2540270   NP_596431 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta