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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GABPA, GA binding protein transcription factor, alpha subunit 60kDa
Sequence ID:NM_001197297
NM_002040
Entrez Gene ID:2551
Ensembl ID:ENSG00000154727

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:21q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:21: 27107726 - 27142033

Transcript StartTranscript EndChromosomal Start Chromosomal End
15612710732827107888
5626642711388327113985
6658092711752027117664
8108942712134627121430
89511402712429927124544
114113352713032027130514
133613892713462227134675
139015302713652027136660
153117232713690527137097
172451792714131427144769

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5264778Full LengthBC035031GA binding protein transcription factor, alpha subunit 60kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002031  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001197297 NP_001184226    
NM_002040 NP_002031 Q06546 Ets
SAM_PNT

Related Sequences

 
mRNAGenPeptSwissProt
U13044 AAA65706 Q06546
BC035031 AAH35031 Q8IYS3
EU159453 ABV90873 A8IE48
EU446476 ABZ92005  
EU832825 ACE87836  
GQ129237 ACT64371  
JQ313900 AFH41795 A8IE48
D13318 BAA02575 Q06546
AK223164 BAD96884 Q53FW7
AK313545 BAG36321 B2R8X4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GABPA NP_001184226 R.norvegicus Gabpa 363735   NP_001102311 98
M.musculus Gabpa 14390 Gene Info NP_032091 96
A.gambiae AgaP_AGAP004337 1274484   XP_313616 44
D.melanogaster Ets97D 43236   NP_524523 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)