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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LAMA5, laminin, alpha 5
Sequence ID:NM_005560
Entrez Gene ID:3911
Ensembl ID:ENSG00000130702

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal medulla, b-cell, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.2-q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 60902920 - 60903435

 Exon Info From UCSC:
NM_005560

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005560 NP_005551 O15230  

Related Sequences

 
mRNAGenPeptSwissProt
BC085017 AAH85017 Q5U4N9
AF443072 AAM12527 O15230
AB011105 BAA25459 O15230
AB010099 BAA31347 O75079
AB067494 BAB67800 O15230
Z95636 CAB09137 O15230

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LAMA5 NP_005551 M.musculus Lama5 16776 Gene Info NP_001074640 80
R.norvegicus Lama5 140433   XP_215963 80
A.gambiae AgaP_AGAP004993 1275819   XP_315098 35
C.elegans epi-1 177956   NP_001023282 35
D.melanogaster LanA 38723   NP_476617 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)