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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CDH4, cadherin 4, type 1, R-cadherin (retinal)
Sequence ID:NM_001252338
NM_001252339
NM_001794
Entrez Gene ID:1002
Ensembl ID:ENSG00000179242

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 60513982 - 60515512


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069157Full LengthBC101651cadherin 4, type 1, R-cadherin (retinal)
8327618Full LengthBC112150cadherin 4, type 1, R-cadherin (retinal)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001785  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252338 NP_001239267    
NM_001252339 NP_001239268    
NM_001794 NP_001785 P55283 Cadherin
Cadherin_C

Related Sequences

 
mRNAGenPeptSwissProt
L34059 AAA35627 P55283
BC101651 AAI01652 P55283
BC112150 AAI12151 P55283
AK025855 BAB15259 Q9H6K0
AK091496 BAC03677 Q8NB64
AK315192 BAG37632 B2RCN5
AK124724 BAG54080 B3KWB8
AL834206 CAD38893 Q8ND09

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CDH4 NP_001785 M.musculus Cdh4 12561 Gene Info NP_033997 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)