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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCIF1, PDX1 C-terminal inhibiting factor 1
Sequence ID:NM_022104
Entrez Gene ID:63935
Ensembl ID:ENSG00000100982

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 44563336 - 44576659

 Exon Info From UCSC:
NM_022104

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3640928Full LengthBC013365PDX1 C-terminal inhibiting factor 1
4131938Full LengthBC010005PDX1 C-terminal inhibiting factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071387  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022104 NP_071387 Q9H4Z3 WW

Related Sequences

 
mRNAGenPeptSwissProt
BC010005 AAH10005 Q9H4Z3
BC013365 AAH13365 Q9H4Z3
EU832741 ACE87073  
EU832663 ACE87754  
AB050014 BAC45238 Q9H4Z3
AK299435 BAH13031 B7Z5U5
AL137473 CAB70757 Q9H4Z3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCIF1 NP_071387 R.norvegicus Pcif1 362269   NP_001102075 96
M.musculus Pcif1 228866 Gene Info NP_666241 95
D.melanogaster CG11399 40295   NP_649254 48
A.gambiae AgaP_AGAP011933 1280736   XP_320600 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)