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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLCO1C1, solute carrier organic anion transporter family, member 1C1
Sequence ID:NM_001145944
NM_001145945
NM_001145946
NM_017435
Entrez Gene ID:53919
Ensembl ID:ENSG00000139155

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 20848398 - 20906320

 Exon Info From UCSC:
NM_001145944
NM_001145945
NM_001145946
NM_017435

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4801171Full LengthBC022461solute carrier organic anion transporter family, member 1C1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_059131  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145944 NP_001139416    
NM_001145945 NP_001139417    
NM_001145946 NP_001139418    
NM_017435 NP_059131 Q9NYB5 OATP
Kazal_2

Related Sequences

 
mRNAGenPeptSwissProt
AF260704 AAF70338 Q9NYB5
AF205076 AAG42208 Q9NYB5
BC022461 AAH22461 Q9NYB5
EU176210 ABW03661  
AK294333 BAH11737 B7Z251
AK296236 BAH12289 Q9NYB5
AK303713 BAH14027 B7Z8P1
AL834209 CAI46209 Q5JPA4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLCO1C1 NP_059131 R.norvegicus Slco1c1 84511   NP_445893 85
M.musculus Slco1c1 58807 Gene Info NP_067446 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)