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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNIP1, Smad nuclear interacting protein 1
Sequence ID:NM_024700
RefSeqGene ID:NG_032170
Entrez Gene ID:79753
Ensembl ID:ENSG00000163877

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 38002499 - 38019903

NM_024700 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
6415323800214438003612
153321313800575738006355
213222343801824538018347
223525313801960638019902

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4540112Full LengthBC027040Smad nuclear interacting protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078976  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024700 NP_078976 Q8TAD8 FHA

Related Sequences

 
mRNAGenPeptSwissProt
BC027040 AAH27040 Q8TAD8
AY081909 AAL91140 Q8TAD8
HQ447254 ADQ31741  
AK022615 BAB14134 Q8TAD8
AK027622 BAB55241 Q8TAD8
AK315574 BAG37948 B1AK66
AK293229 BAG56768 B4DDK7
AK297176 BAG59668 B4DLV6
AK300796 BAG62455 B4DUU3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNIP1 NP_078976 R.norvegicus Snip1 313588   NP_001014091 87
M.musculus Snip1 76793 Gene Info NP_780455 86
C.elegans C32E8.5 171946   NP_491217 57
A.thaliana DDL 821601   NP_188691 52
D.melanogaster CG17168 3354996   NP_001015254 46
N.crassa NCU06883 3875402   XP_959230 43
P.falciparum PF13_0042 814021   XP_001349805 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)