Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. HDLBP, high density lipoprotein binding protein
Sequence ID:NM_001243900
Entrez Gene ID:3069
Ensembl ID:ENSG00000115677

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q37.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 242167315 - 242168850

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3528704Full LengthBC001179high density lipoprotein binding protein
3920936IncompleteBC038965high density lipoprotein binding protein (vigilin)
4099438IncompleteBC014305high density lipoprotein binding protein
40006561IncompleteBC113120high density lipoprotein binding protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005327  NP_976221  

Protein Infomation

NM_001243900 NP_001230829    
NM_005336 NP_005327 Q00341 KH_1
NM_203346 NP_976221 Q00341 KH_1

Related Sequences

M64098 AAA35962 Q00341
AF116718 AAF71138 Q9P1C0
BC001179 AAH01179 Q00341
BC014305 AAH14305 Q96CF6
BC113120 AAI13121 Q2HJC8
DQ891887 ABM82813  
EU176652 ABW03453  
AK127833 BAC87153 Q6ZS03
AK131375 BAD18526 Q6ZN49
AK312335 BAG35256 B2R5V9
AK296684 BAG59280 B4DKR8
AK300312 BAG62064 B4DTQ2
BX648235 CAI46262 Q5HYC5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens HDLBP NP_005327 M.musculus Hdlbp 110611 Gene Info NP_598569 98
R.norvegicus Hdlbp 64474   NP_742036 98
A.gambiae AgaP_AGAP005467 3289973   XP_001237663 51
D.melanogaster Dp1 37116   NP_523781 49
C.elegans C08H9.2 174543   NP_496136 40
N.crassa NCU03897 3873690   XP_957536 28
S.pombe vgl1 2539425   NP_588106 28
S.cerevisiae SCP160 853365   NP_012455 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)