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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMB2, proteasome (prosome, macropain) subunit, beta type, 2
Sequence ID:NM_001199779
NM_001199780
NM_002794
Entrez Gene ID:5690
Ensembl ID:ENSG00000126067

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 36068118 - 36107127

Transcript StartTranscript EndChromosomal Start Chromosomal End
72423606873936068974
2432923607083336070882
2934553607484636075008
4565263609687436096944
5276493610191036102032
6508503610694236107142

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6745302Full LengthBC107901proteasome (prosome, macropain) subunit, beta type, 2
8069342Full LengthBC101836proteasome (prosome, macropain) subunit, beta type, 2
8144129Full LengthBC105126proteasome (prosome, macropain) subunit, beta type, 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002785  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001199779 NP_001186708      
NM_001199780 NP_001186709      
NM_002794 NP_002785 P49721 EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC101836 AAI01837 P49721 EC 3.4.25.1
BC105126 AAI05127 P49721 EC 3.4.25.1
BC107901 AAI07902 P49721 EC 3.4.25.1
BT007137 AAP35801 P49721 EC 3.4.25.1
DQ893539 ABM84465    
DQ896799 ABM87798    
D26599 BAA05646 P49721 EC 3.4.25.1
AB209470 BAD92707 Q59FJ0  
AK296956 BAH12464 B7Z478  
CR456862 CAG33143 P49721 EC 3.4.25.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMB2 NP_002785 M.musculus Psmb2 26445 Gene Info NP_036100 97
R.norvegicus Psmb2 29675   NP_058980 96
A.gambiae AgaP_AGAP008837 1279804   XP_319581 57
D.melanogaster CG17331 34999   NP_609804 51
N.crassa NCU01368 3876867   XP_960720 47
A.thaliana PBD1 821834   NP_188902 46
S.pombe SPAC31A2.04c 2543122   NP_592916 46
A.thaliana PBD2 827135   NP_001190731 45
S.cerevisiae PRE1 856731   NP_010928 45
P.falciparum PF14_0676 812258   XP_001348850 41
C.elegans pbs-4 171975   NP_491261 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)