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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GALNT12, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
Sequence ID:NM_024642
RefSeqGene ID:NG_028218
Entrez Gene ID:79695
Ensembl ID:ENSG00000119514

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q22.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 101569980 - 101611374

NM_024642 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1371101569980101570350
372541101585537101585706
542731101589033101589222
732917101594053101594238
9181035101597530101597647
10361212101599253101599429
12131344101602283101602414
13451458101606377101606490
14591605101608258101608404
16062730101611233101612357

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015747Full LengthBC148739UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
100015420BC148409UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078918  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_024642 NP_078918 Q8IXK2 EC 2.4.1.41 Glycos_transf_2
Ricin_B_lectin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC013945 AAH13945 Q8IXK2 EC 2.4.1.41
BC148409 AAI48410    
BC148739 AAI48740 Q8IXK2 EC 2.4.1.41
AK024865 BAB15027 Q8IXK2 EC 2.4.1.41
AB078146 BAC07181 Q8IXK2 EC 2.4.1.41
AB040673 BAD93346 Q58A70  
AJ132365 CAC80100 Q8IXK2 EC 2.4.1.41
AJ505963 CAD44541 Q68VJ1  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GALNT12 NP_078918 M.musculus Galnt12 230145 Gene Info NP_766281 86
R.norvegicus Galnt12 313233   XP_232988 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)