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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF4, Serine/arginine-rich splicing factor 4
Sequence ID:NM_005626
Entrez Gene ID:6429
Ensembl ID:ENSG00000116350

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 29494539 - 29496333

NM_005626 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
714942947425029475737
149515842947661429476703
158517992948120729481421
180019122948588529485997
191320552948688629487028
205625352950815729508636

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3619538Full LengthBC002781splicing factor, arginine/serine-rich 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005617  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005626 NP_005617 Q08170 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
L14076 AAA36649 Q08170
BC002781 AAH02781 Q08170
BT007415 AAP36083 Q08170
DQ893846 ABM84772  
AB209856 BAD93093 Q59EF5
AK223444 BAD97164 Q53F45
AK291509 BAF84198 A8K644
AK293706 BAG57139 B4DEM8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF4 NP_005617 M.musculus Srsf4 57317 Gene Info NP_065612 91
R.norvegicus Srsf4 362612   NP_001102155 91
C.elegans rsp-2 174747   NP_496441 53
P.falciparum PF10_0217 810374   XP_001347501 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)