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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RGPD5, RANBP2-like and GRIP domain containing 5
Sequence ID:NM_005054
NM_032260
Entrez Gene ID:84220
Ensembl ID:ENSG00000015568

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 110593722 - 110615262

 Exon Info From UCSC:
NM_005054
NM_032260

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015385BC148413RANBP2-like and GRIP domain containing 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005045  NP_115636  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164463 NP_001157935 O14715  
NM_005054 NP_005045 Q99666 TPR_1
Ran_BP1
GRIP
NM_032260 NP_115636   TPR_1
NM_181453 NP_852118    

Related Sequences

 
mRNAGenPeptSwissProt
U64675 AAB41848 Q99666
AF012086 AAC05596 O14715
AF273042 AAG34902 Q8IWJ2
BC020645 AAH20645 A0PJA5
BC037774 AAH37774 Q8IWJ2
BC146789 AAI46790 Q8IWJ2
BC148413 AAI48414  
AF432211 AAL99918 Q8IWJ2
AB002334 BAA20794 Q8IWJ2
AB209082 BAD92319 Q99666
AK090813 BAG52233 B3KR21
AL136868 CAB66802 Q99666
CR936614 CAI56757 O14715
XM_003960914 XP_003960963  
XM_003960915 XP_003960964  
XM_003960916 XP_003960965  
XM_003960917 XP_003960966  
XM_003960918 XP_003960967  
XM_003960919 XP_003960968  
XM_003960920 XP_003960969  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RGPD5 NP_005045 H.sapiens RGPD6 729540 Gene Info NP_001116835 100
H.sapiens RGPD8 727851 Gene Info NP_001157935 99
H.sapiens RGPD3 653489 Gene Info NP_001137485 96
H.sapiens RGPD4 285190 Gene Info NP_872394 95
H.sapiens RGPD2 729857 Gene Info NP_001071638 94
H.sapiens RGPD1 400966 Gene Info NP_001019628 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)