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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. WDTC1, WD and tetratricopeptide repeats 1
Sequence ID:NM_015023
Entrez Gene ID:23038
Ensembl ID:ENSG00000142784

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 27614199 - 27635053

 Exon Info From UCSC:
NM_015023

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5500384Full LengthBC032523WD and tetratricopeptide repeats 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055838  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015023 NP_055838   WD40
TPR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC032523 AAH32523 Q8N5D0
JF432742 ADZ15959  
AB028960 BAA82989 Q8N5D0
AK001734 BAA91868 Q8N5D0
AK023778 BAB14675 Q9H8E2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens WDTC1 NP_055838 M.musculus Wdtc1 230796 Gene Info NP_955010 97
R.norvegicus Wdtc1 313020   NP_001101378 97
A.gambiae AgaP_AGAP003346 1275024   XP_314246 45
D.melanogaster adp 37073   NP_611296 42
A.gambiae AgaP_AGAP012877 3292573   XP_561157 40
A.thaliana AT5G10940 830961   NP_568242 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)