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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARID1A, AT rich interactive domain 1A (SWI-like)
Sequence ID:NM_006015
NM_139135
RefSeqGene ID:NG_029965
Entrez Gene ID:8289
Ensembl ID:ENSG00000117713

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 27055870 - 27101392

 Exon Info From UCSC:
NM_006015
NM_139135

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4802284IncompleteBC112895AT rich interactive domain 1A (SWI-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006006  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006015 NP_006006 O14497 ARID
NM_139135 NP_624361    

Related Sequences

 
mRNAGenPeptSwissProt
AF217506 AAF67617 Q9NZ92
AF265208 AAF75765 O14497
AF219114 AAG17549 O14497
AF231056 AAG33967 O14497
BC112895 AAI12896 A4FU79
AF268913 AAK54505 O14497
AF521670 AAN03446 O14497
AB001895 BAA23269 O14497
AK027442 BAB55114 Q96T01
AK027467 BAB55132 Q96SY8
AK027655 BAB55270 Q96SM7
AK074940 BAC11306 Q8NC65
AK223275 BAD96995 O14497
AB210022 BAE06104 Q4LE49

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARID1A NP_006006 M.musculus Arid1a 93760 Gene Info NP_001074288 97
R.norvegicus Arid1a 297867   NP_001100105 96
D.melanogaster osa 42130   NP_996228 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta