Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDPN, podoplanin
Sequence ID:NM_001006624
NM_001006625
NM_006474
NM_198389
Entrez Gene ID:10630
Ensembl ID:ENSG00000162493

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 13910528 - 13940907

 Exon Info From UCSC:
NM_001006624
NM_001006625
NM_006474
NM_198389

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4875444Full LengthBC022812podoplanin
4876446Full LengthBC014668podoplanin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001006625  NP_938203  NP_006465  NP_001006626  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001006624 NP_001006625   Podoplanin
NM_001006625 NP_001006626   Podoplanin
NM_006474 NP_006465   Podoplanin
NM_198389 NP_938203   Podoplanin

Related Sequences

 
mRNAGenPeptSwissProt
AF030427 AAD01899 Q86YL7
AF030428 AAD01900 Q86YL7
BC014668 AAH14668 Q86YL7
BC022812 AAH22812 Q86YL7
AF390106 AAM73655 Q86YL7
AY194238 AAO22143 Q86YL7
AK075327 BAC11550 Q86YL7
AK075345 BAC11557 Q86YL7
AB127958 BAD04046 Q86YL7
AK312607 BAG35495 Q86YL7
AJ225022 CAA12352 Q86YL7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDPN NP_006465 R.norvegicus Pdpn 54320   NP_062231 51
M.musculus Pdpn 14726 Gene Info NP_034459 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)