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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CALM2, calmodulin 2 (phosphorylase kinase, delta)
Sequence ID:NM_001743
Entrez Gene ID:805
Ensembl ID:ENSG00000143933

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 47387914 - 47403650

NM_001743 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
87304738722047387942
7318664738886147388996
8679734738942447389530
97411174738965747389800
111811484739787247397902
114913094740357947403739

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2899899Full LengthBC003354calmodulin 2 (phosphorylase kinase, delta)
3542044Full LengthBC006464calmodulin 2 (phosphorylase kinase, delta)
3681165Full LengthBC017385calmodulin 2 (phosphorylase kinase, delta)
3683323Full LengthBC026065calmodulin 2 (phosphorylase kinase, delta)
4092978Full LengthBC008437calmodulin 2 (phosphorylase kinase, delta)
4656551Full LengthBC018677calmodulin 2 (phosphorylase kinase, delta)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001734  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001743 NP_001734 P62158 efhand

Related Sequences

 
mRNAGenPeptSwissProt
M19311 AAA35641 P62158
BC003354 AAH03354 P62158
BC006464 AAH06464 P62158
BC008437 AAH08437 P62158
BC017385 AAH17385 P62158
BC018677 AAH18677 P62158
BC026065 AAH26065 P62158
BT009916 AAP88918 P62158
D45887 BAA08302 P62158
AK315694 BAG38057 B2RDW0
CR541990 CAG46787 P62158
CR542021 CAG46818 P62158

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CALM2 NP_001734 H.sapiens CALM3 808 Gene Info NP_005175 100
H.sapiens CALM1 801 Gene Info NP_008819 100
A.thaliana CAM2 818710   NP_001189724 89
N.crassa NCU04120 3877440   XP_961276 85
S.pombe cam1 2543039   NP_593340 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta