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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOCS5, suppressor of cytokine signaling 5
Sequence ID:NM_014011
NM_144949
Entrez Gene ID:9655
Ensembl ID:ENSG00000171150

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 46926090 - 46989920

 Exon Info From UCSC:
NM_014011
NM_144949

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5264754Full LengthBC032862suppressor of cytokine signaling 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_659198  NP_054730  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014011 NP_054730 O75159 SH2
SOCS_box
NM_144949 NP_659198 O75159 SH2
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
AF073958 AAD40484 O75159
BC032862 AAH32862 O75159
DQ891213 ABM82139  
DQ894396 ABM85322  
AB014571 BAA31646 O75159
AK290194 BAF82883 O75159
AL136896 CAB66830 O75159

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOCS5 NP_054730 R.norvegicus Socs5 500616   NP_001102744 95
M.musculus Socs5 56468 Gene Info NP_062628 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)