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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC8A1, solute carrier family 8 (sodium/calcium exchanger), member 1
Sequence ID:NM_001112800
NM_001112801
NM_001112802
NM_001252624
NM_021097
Entrez Gene ID:6546
Ensembl ID:ENSG00000183023

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p23-p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 40342328 - 40655749

 Exon Info From UCSC:
NM_001112800
NM_001112801
NM_001112802
NM_021097

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069182Full LengthBC172488solute carrier family 8 (sodium/calcium exchanger), member 1
40008516IncompleteBC098285solute carrier family 8 (sodium/calcium exchanger), member 1
100061840BC156359solute carrier family 8 (sodium/calcium exchanger), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066920  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001112800 NP_001106271    
NM_001112801 NP_001106272    
NM_001112802 NP_001106273    
NM_001252624 NP_001239553    
NM_021097 NP_066920 P32418 Na_Ca_ex
Calx-beta

Related Sequences

 
mRNAGenPeptSwissProt
M91368 AAA35702 P32418
AF115505 AAD17213 P32418
AF128524 AAD26362 P32418
AF108388 AAF08987 P32418
AF108389 AAF08988 P32418
BC098285 AAH98285 Q4QQH3
BC098308 AAH98308 Q4QQG6
BC156359 AAI56360  
BC172488 AAI72488  
AB209075 BAD92312 Q59GN4
AK291696 BAF84385 P32418
X91815 CAA62923 Q14913
Y12878 CAA73378 Q6LAJ8
Y12885 CAA73386 Q6LAJ9
Y13032 CAA73477 Q6LAJ9
Y13033 CAA73478 Q6LAJ8
BX537482 CAD97765 Q7Z686

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC8A1 NP_066920 M.musculus Slc8a1 20541 Gene Info NP_001106269 95
R.norvegicus Slc8a1 29715   NP_062141 95
C.elegans ncx-1 180318   NP_001041182 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)