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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB10, RAB10, member RAS oncogene family
Sequence ID:NM_016131
Entrez Gene ID:10890
Ensembl ID:ENSG00000084733

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 26257384 - 26358247

NM_016131 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18762625672826257603
8779372632153026321590
93810762633263626332774
107711662635001226350101
116712682635071826350819
126937842635780626360321

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3464547Full LengthBC000896RAB10, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057215  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016131 NP_057215   Ras
Miro

Related Sequences

 
mRNAGenPeptSwissProt
AF106681 AAD43034 P61026
AF091032 AAF00045 Q9UL28
AF297660 AAG13413 P61026
BC000896 AAH00896 P61026
AF498945 AAM21093 P61026
AF086917 AAP97147 P61026
EU831733 ACE86567  
EU831649 ACE87249  
HQ447911 ADQ32395  
AK023223 BAB14474 P61026
AL136650 CAB66585 P61026
CR457303 CAG33584 P61026

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB10 NP_057215 R.norvegicus Rab10 50993   NP_059055 100
M.musculus Rab10 19325 Gene Info NP_057885 100
D.melanogaster Rab10 33025   NP_523419 82
C.elegans rab-10 266836   NP_491857 79
A.gambiae AgaP_AGAP000671 1272433   XP_311197 69

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)