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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LAPTM4A, Lysosomal protein transmembrane 4 alpha
Sequence ID:NM_014713
Entrez Gene ID:9741
Ensembl ID:ENSG00000068697

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 20232415 - 20251439

NM_014713 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
206482023241120233039
6497472023407720234175
7488432023472720234822
8449662023707620237198
96710432023729820237374
104411642024065120240771
116517832025117020251788

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2958870Full LengthBC003158lysosomal protein transmembrane 4 alpha
2964450Full LengthBC000421lysosomal protein transmembrane 4 alpha
30402963Full LengthBC093075lysosomal protein transmembrane 4 alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055528  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014713 NP_055528 Q6IBP4
Q15012
Mtp

Related Sequences

 
mRNAGenPeptSwissProt
BC000421 AAH00421 Q6IBP4
Q15012
BC003158 AAH03158 Q9BTU8
BC093075 AAH93075 Q6IBP4
Q15012
AY359028 AAQ89387 Q15012
JF432629 ADZ15846  
D14696 BAA03522 Q15012
AK304433 BAG65258 B4E2U6
CR456758 CAG33039 Q6IBP4
Q15012

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LAPTM4A NP_055528 R.norvegicus Laptm4a 298875   NP_955416 98
M.musculus Laptm4a 17775 Gene Info NP_032666 97
D.melanogaster CG14767 50250   NP_724705 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)