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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRIM28, tripartite motif containing 28
Sequence ID:NM_005762
Entrez Gene ID:10155
Ensembl ID:ENSG00000130726

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 59059659 - 59062089

 Exon Info From UCSC:
NM_005762

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2906325Full LengthBC004978tripartite motif-containing 28
6502540Full LengthBC052986tripartite motif-containing 28
3831930IncompleteBC007390tripartite motif-containing 28

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005753  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005762 NP_005753 Q13263 PHD
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
U31657 AAA74954 Q13263
U78773 AAB37341 Q13263
U95040 AAB51517 Q13263
BC004978 AAH04978 Q13263
BC007390 AAH07390 Q13263
BC052986 AAH52986 Q13263
AK313478 BAG36262 B2R8R5
X97548 CAA66150 Q13263

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRIM28 NP_005753 M.musculus Trim28 21849 Gene Info NP_035718 94
R.norvegicus Trim28 116698   NP_446368 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)