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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPS9, ribosomal protein S9
Sequence ID:NM_001013
Entrez Gene ID:6203
Ensembl ID:ENSG00000170889

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 54705040 - 54711515

NM_001013 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1315470472554704755
321535470502754705148
1542765470535454705476
2774635471014354710329
4647115471126554711512

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964451Full LengthBC007410ribosomal protein S9
2964451Full LengthBC007434ribosomal protein S9
3452221Full LengthBC000802ribosomal protein S9
3507400Full LengthBC096756ribosomal protein S9
4298534Full LengthBC007857ribosomal protein S9
5454636Full LengthBC068055ribosomal protein S9
6258045Full LengthBC071940ribosomal protein S9
6647283IncompleteBC071941ribosomal protein S9
30563301IncompleteBC096822ribosomal protein S9
40131545IncompleteBC141920ribosomal protein S9

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001013 NP_001004 P46781 Ribosomal_S4
S4

Related Sequences

 
mRNAGenPeptSwissProt
U14971 AAA85659 P46781
BC000802 AAH00802 P46781
BC007410 AAH07410 P46781
BC007434 AAH07434 P46781
BC007857 AAH07857 P46781
BC068055 AAH68055 P46781
BC071940 AAH71940 P46781
BC096756 AAH96756 P46781
BC141920 AAI41921 A5D904
DQ891200 ABM82126  
DQ894383 ABM85309  
AB055775 BAB62869  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS9 NP_001004 R.norvegicus RGD1566136 300278   XP_213106 96
D.melanogaster RpS9 39108   NP_524004 88
A.gambiae AgaP_AGAP005061 1274744   XP_313936 87
C.elegans rps-9 174699   NP_496384 83
N.crassa NCU01949 3880382   XP_964233 78
S.pombe rps902 2540367   NP_595840 77
S.pombe rps901 2542629   NP_592945 77
A.thaliana AT5G15200 831372   NP_197024 75
A.thaliana AT5G39850 833981   NP_198801 74
P.falciparum PFE1005w 813016   XP_001351758 73
S.cerevisiae RPS9B 852487   NP_009748 71
S.cerevisiae RPS9A 856024   NP_015244 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)