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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNTB1, syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)
Sequence ID:NM_021021
Entrez Gene ID:6641
Ensembl ID:ENSG00000172164

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q23-q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 121582499 - 121823803

NM_021021 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
23225121547985121551208
32263416121554049121554239
34173613121561001121561197
36143753121587325121587464
37543961121644683121644890
39624178121705931121706147
41794975121823512121824308

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30925462Full LengthBC098573syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066301  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021021 NP_066301 Q13884 PH
PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF028828 AAB84253 Q13884
BC098573 AAH98573 Q13884
AK292655 BAF85344 Q13884

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNTB1 NP_066301 M.musculus Sntb1 20649 Gene Info NP_057876 93
R.norvegicus Sntb1 299940   NP_001124014 93
A.gambiae AgaP_AGAP012354 1280355   XP_320202 47
D.melanogaster Syn1 40424   NP_524205 46
C.elegans stn-1 266844   NP_492521 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)