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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMG9, Smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Sequence ID:NM_019108
Entrez Gene ID:56006
Ensembl ID:ENSG00000105771

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 44236421 - 44259114

 Exon Info From UCSC:
NM_019108

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4131601Full LengthBC008869chromosome 19 open reading frame 61

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019108 NP_061981 Q9H0W8  

Related Sequences

 
mRNAGenPeptSwissProt
BC008869 AAH08869 Q9H0W8
AK022948 BAB14323 Q9H0W8
AL136606 CAB66541 Q9H0W8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMG9 NP_061981 M.musculus 1500002O20Rik 71997 Gene Info NP_082323 97
R.norvegicus Smg9 365215   NP_001014265 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)