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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LTBP4, latent transforming growth factor beta binding protein 4
Sequence ID:NM_001042544
NM_001042545
NM_003573
RefSeqGene ID:NG_021201
Entrez Gene ID:8425
Ensembl ID:ENSG00000090006

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1-q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 41107276 - 41135528

 Exon Info From UCSC:
NM_001042544
NM_001042545
NM_003573

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003564  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042544 NP_001036009 Q8N2S1  
NM_001042545 NP_001036010    
NM_003573 NP_003564   EGF
TB
EGF_CA

Related Sequences

 
mRNAGenPeptSwissProt
AF051344 AAC39879 Q8N2S1
AF051345 AAC39880 Q8N2S1
AF054501 AAC39881 O75440
AF054502 AAC39882 O75441
AK074499 BAC11024 Q8N2S1
AK128191 BAG54648 B3KXY6
AK304612 BAH14224 B7Z988
Y13622 CAA73944 Q8N2S1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LTBP4 NP_001036009 M.musculus Ltbp4 108075 Gene Info NP_783572 89
R.norvegicus Ltbp4 292734   NP_001163807 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)