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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PAF1, Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
Sequence ID:NM_001256826
Entrez Gene ID:54623
Ensembl ID:ENSG00000006712

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39876491 - 39876946

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2960015Full LengthBC013402Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
3504227Full LengthBC000017Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061961  

Protein Infomation

NM_001256826 NP_001243755    
NM_019088 NP_061961 Q8N7H5 Paf1

Related Sequences

BC000017 AAH00017 Q8N7H5
BC013402 AAH13402 Q8N7H5
DQ891839 ABM82765  
DQ895026 ABM85952  
AK001985 BAA92020 Q8N7H5
AK098423 BAC05305 Q8N7H5
AK294625 BAG57806 B4DGJ5
AJ401156 CAC20564 Q8N7H5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens PAF1 NP_061961 M.musculus Paf1 54624 Gene Info NP_062331 99
R.norvegicus Paf1 361531   NP_001020069 98
A.gambiae AgaP_AGAP001302 1281874   XP_321844 53
D.melanogaster atms 40593   NP_649493 53
C.elegans C55A6.9 179583   NP_505925 34
A.thaliana ELF7 844312   NP_178091 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)