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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CNN1, Calponin 1, basic, smooth muscle
Sequence ID:NM_001299
Entrez Gene ID:1264
Ensembl ID:ENSG00000130176

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2-p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 11649665 - 11661138

NM_001299 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12271164957811649804
2283491165189011652011
3504161165748911657555
4175541165764611657783
5556651165861111658721
6668121166013711660283
81315861166036411661137

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4824832Full LengthBC022015calponin 1, basic, smooth muscle
5165618Full LengthBC036307calponin 1, basic, smooth muscle

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001290  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001299 NP_001290 P51911 CH
Calponin

Related Sequences

 
mRNAGenPeptSwissProt
S80560 AAB35751 P51911
U37019 AAC51780 P51911
BC022015 AAH22015 P51911
BC036307 AAH36307 P51911
HQ448227 ADQ32707  
D17408 BAA04231 P51911
D86058 BAA12983 P51911
AK223234 BAD96954 Q53FP8
AK313255 BAG36065 P51911
AK300837 BAG62488 B4DUX6
AK301888 BAH13577 B7Z7E1
AK316406 BAH14777 B7Z7E1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CNN1 NP_001290 M.musculus Cnn1 12797 Gene Info NP_034052 98
R.norvegicus Cnn1 65204   NP_113935 97
D.melanogaster CG5023 42400   NP_650867 43
A.gambiae AgaP_AGAP000749 1272338   XP_311284 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)