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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RFX2, Regulatory factor X, 2 (influences HLA class II expression)
Sequence ID:NM_000635
NM_134433
Entrez Gene ID:5990
Ensembl ID:ENSG00000087903

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 5993526 - 6044266

 Exon Info From UCSC:
NM_000635
NM_134433

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4829582Full LengthBC028579regulatory factor X, 2 (influences HLA class II expression)
5276369Full LengthBC071571regulatory factor X, 2 (influences HLA class II expression)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000626  NP_602309  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000635 NP_000626 P48378 RFX_DNA_binding
RFX1_trans_act
NM_134433 NP_602309   RFX_DNA_binding
RFX1_trans_act

Related Sequences

 
mRNAGenPeptSwissProt
BC028579 AAH28579 P48378
BC071571 AAH71571 P48378
DQ895312 ABM86238  
EU176246 ABW03697  
AK291196 BAF83885 P48378
AK024288 BAG51286 P48378
AK302661 BAH13773 B7Z7Y7
AK303321 BAH13941 B7Z8F5
X76091 CAA53705 P48378

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RFX2 NP_000626 R.norvegicus Rfx2 301121   NP_001100347 90
M.musculus Rfx2 19725 Gene Info NP_082063 89
C.elegans daf-19 174577   NP_001022140 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)