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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BTBD2, BTB (POZ) domain containing 2
Sequence ID:NM_017797
Entrez Gene ID:55643
Ensembl ID:ENSG00000133243

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 1985446 - 2015702

NM_017797 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
39124019854461986647
1241138719868281986974
1388147519871641987251
1476166819874981987690
1669186619900021990199
1867197219907151990820
1973212919930181993174
2130224919973421997461
2250265620152952015701

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062784Full LengthBC156974BTB (POZ) domain containing 2
2959664IncompleteBC008035BTB (POZ) domain containing 2
3162813IncompleteBC000564BTB (POZ) domain containing 2
5474960IncompleteBC069199BTB (POZ) domain containing 2
5485426IncompleteBC053986BTB (POZ) domain containing 2
5804460IncompleteBC094820BTB (POZ) domain containing 2
100015984BC152718BTB (POZ) domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060267  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017797 NP_060267 Q9BX70 BTB
PHR

Related Sequences

 
mRNAGenPeptSwissProt
BC000564 AAH00564 Q9BX70
BC008035 AAH08035 Q9BX70
BC053986 AAH53986 Q9BX70
BC069199 AAH69199 Q6NT96
BC094820 AAH94820 Q9BX70
BC152718 AAI52719  
BC156974 AAI56975  
AF355797 AAK25826 Q9BX70
AK000393 BAA91136 Q9BX70
AK027481 BAB55143 Q9BX70
AL360275 CAB96527 Q9BX70
CR457230 CAG33511 Q9BX70

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BTBD2 NP_060267 R.norvegicus Btbd2 500793   XP_576181 98
M.musculus Btbd2 208198 Gene Info NP_663336 95
C.elegans tag-30 178116   NP_502244 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)