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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CTDP1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
Sequence ID:NM_001202504
NM_004715
NM_048368
RefSeqGene ID:NG_007988
Entrez Gene ID:9150
Ensembl ID:ENSG00000060069

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 77455222 - 77514501

 Exon Info From UCSC:
NM_004715
NM_048368

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5500032Full LengthBC063447CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
4864552IncompleteBC015010CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
6644683IncompleteBC052576CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001202504 NP_001189433      
NM_004715 NP_004706 Q9Y5B0 EC 3.1.3.16  
NM_048368 NP_430255      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF081287 AAC64549 Q9Y5B0 EC 3.1.3.16
AF154115 AAD42088 Q9Y5B0 EC 3.1.3.16
BC015010 AAH15010 Q9Y5B0 EC 3.1.3.16
BC052576 AAH52576 Q9Y5B0 EC 3.1.3.16
BC063447 AAH63447 Q9Y5B0 EC 3.1.3.16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTDP1 NP_004706 M.musculus Ctdp1 67655 Gene Info NP_080571 80
R.norvegicus Ctdp1 291414   NP_001099601 79
C.elegans fcp-1 172719   NP_492423 42
D.melanogaster Fcp1 37925   NP_611934 42
A.gambiae AgaP_AGAP005119 1274797   XP_314000 40
A.thaliana CPL4 5008312   NP_001078764 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)