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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPD1, small nuclear ribonucleoprotein D1 polypeptide 16kDa
Sequence ID:NM_006938
Entrez Gene ID:6632
Ensembl ID:ENSG00000167088

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 19202685 - 19209099

NM_006938 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11451919225919192403
1462221920268519202761
2234141920370819203899
41516001920902219210207

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3355716Full LengthBC001721small nuclear ribonucleoprotein D1 polypeptide 16kDa
6464946Full LengthBC072427small nuclear ribonucleoprotein D1 polypeptide 16kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008869  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006938 NP_008869 P62314 LSM

Related Sequences

 
mRNAGenPeptSwissProt
J03798 AAA36620 P62314
BC001721 AAH01721 P62314
BC072427 AAH72427 P62314
AB451227 BAG70041 P62314
AB451350 BAG70164 P62314
AJ577268 CAE11897 Q7Z5A3
CR542239 CAG47035 P62314

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPD1 NP_008869 M.musculus Snrpd1 20641 Gene Info NP_033252 100
R.norvegicus Snrpd1 291794   NP_001099633 100
D.melanogaster SmD1 44668   NP_524774 82
A.gambiae AgaP_AGAP007246 1269901   XP_308555 80
S.pombe smd1 2542690   NP_594613 80
A.thaliana AT4G02840 828163   NP_001190664 78
C.elegans snr-3 174072   NP_495306 77
N.crassa NCU00505 3880469   XP_964309 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta