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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCR6, chemokine (C-C motif) receptor 6
Sequence ID:NM_004367
NM_031409
Entrez Gene ID:1235
Ensembl ID:ENSG00000112486

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q27Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 167536584 - 167552180

 Exon Info From UCSC:
NM_004367
NM_031409

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5748098Full LengthBC037960chemokine (C-C motif) receptor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004358  NP_113597  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004367 NP_004358 P51684 7tm_1
NM_031409 NP_113597 P51684 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
U60000 AAB06949 P51684
U68030 AAC51124 P51684
U68031 AAD14874  
BC037960 AAH37960 P51684
AY242126 AAO92293 P51684
DQ892462 ABM83388  
DQ895674 ABM86600  
AK223494 BAD97214 Q53EZ5
AK293015 BAF85704 A8KAF0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCR6 NP_004358 R.norvegicus Ccr6 308163   NP_001013163 76
M.musculus Ccr6 12458 Gene Info NP_001177267 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)